q-RASAR: A Path to Predictive Cheminformatics (SpringerBriefs in Molecular Science) 🔍
Kunal Roy, Arkaprava Banerjee
Springer International Publishing, SpringerBriefs in Molecular Science, 2024
English [en] · PDF · 2.4MB · 2024 · 📘 Book (non-fiction) · 🚀/lgli/lgrs/nexusstc · Save
description
This brief offers an introduction to the fascinating new field of quantitative read-across structure-activity relationships (q-RASAR) as a cheminformatics modeling approach in the background of quantitative structure-activity relationships (QSAR) and read-across (RA) as data gap-filling methods. It discusses the genesis and model development of q-RASAR models demonstrating practical examples. It also showcases successful case studies on the application of q-RASAR modeling in medicinal chemistry, predictive toxicology, and materials sciences. The book also includes the tools used for q-RASAR model development for new users. It is a valuable resource for researchers and students interested in grasping the development algorithm of q-RASAR models and their application within specific research domains.
Alternative filename
lgli/3031520564.pdf
Alternative filename
lgrsnf/3031520564.pdf
Alternative publisher
Springer Nature Switzerland AG
Alternative edition
Springer Nature, Cham, 2024
Alternative edition
Switzerland, Switzerland
Alternative edition
1st ed. 2024, FR, 2024
metadata comments
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Alternative description
Foreword
Preface
Contents
1 Chemical Information and Molecular Similarity
1.1 Introduction
1.2 Chemical Information
1.2.1 Chemical Bonding and Interactions
1.2.2 Structure–Property/Activity Relationships
1.3 Molecular Similarity
1.4 Conclusion
References
2 Read-Across and Quantitative Structure–Activity Relationships (QSAR) for Making Predictions and Data Gap-Filling
2.1 Introduction
2.2 Read-Across
2.2.1 Read-Across Hypothesis—The Read-Across Assessment Framework (RAAF) [6]
2.2.2 Structuring and Reporting Read-Across Predictions
2.2.3 Defining the Applicability Domain (AD) of Read-Across
2.3 Quantitative Structure–Activity Relationship (QSAR)
2.3.1 Steps Involved in QSAR Analysis
2.3.2 Applications of QSAR Modeling
2.3.3 QSAR Model Reporting Format (QMRF)
2.3.4 QsarDB
2.4 Conclusion
References
3 Quantitative Read-Across (q-RA) and Quantitative Read-Across Structure–Activity Relationships (q-RASAR)—Genesis and Model Development
3.1 Introduction
3.2 Quantitative Read-Across
3.2.1 GenRA
3.2.2 ToxRead
3.2.3 Apellis
3.2.4 Isalos Analytics Platform
3.2.5 Deimos
3.2.6 Read-Across-v4.2.1
3.3 Read-Across Structure–Activity Relationship (RASAR)
3.3.1 Quantitative Read-Across Structure–Activity Relationship (q-RASAR)
3.4 Conclusion
References
4 Tools, Applications, and Case Studies (q-RA and q-RASAR)
4.1 Introduction
4.2 Cheminformatic Tools from the DTC Laboratory to Perform Read-Across and RASAR Modeling
4.2.1 Read-Across-v4.2.1
4.2.2 Auto_RA_Optimizer-v1.0
4.2.3 RASAR-Desc-Calc-v3.0.2
4.3 Applications and Case Studies of q-RA and q-RASAR
4.3.1 Applications of q-RA
4.3.2 Applications of q-RASAR
4.4 Conclusion
References
5 Future Prospects
References
Preface
Contents
1 Chemical Information and Molecular Similarity
1.1 Introduction
1.2 Chemical Information
1.2.1 Chemical Bonding and Interactions
1.2.2 Structure–Property/Activity Relationships
1.3 Molecular Similarity
1.4 Conclusion
References
2 Read-Across and Quantitative Structure–Activity Relationships (QSAR) for Making Predictions and Data Gap-Filling
2.1 Introduction
2.2 Read-Across
2.2.1 Read-Across Hypothesis—The Read-Across Assessment Framework (RAAF) [6]
2.2.2 Structuring and Reporting Read-Across Predictions
2.2.3 Defining the Applicability Domain (AD) of Read-Across
2.3 Quantitative Structure–Activity Relationship (QSAR)
2.3.1 Steps Involved in QSAR Analysis
2.3.2 Applications of QSAR Modeling
2.3.3 QSAR Model Reporting Format (QMRF)
2.3.4 QsarDB
2.4 Conclusion
References
3 Quantitative Read-Across (q-RA) and Quantitative Read-Across Structure–Activity Relationships (q-RASAR)—Genesis and Model Development
3.1 Introduction
3.2 Quantitative Read-Across
3.2.1 GenRA
3.2.2 ToxRead
3.2.3 Apellis
3.2.4 Isalos Analytics Platform
3.2.5 Deimos
3.2.6 Read-Across-v4.2.1
3.3 Read-Across Structure–Activity Relationship (RASAR)
3.3.1 Quantitative Read-Across Structure–Activity Relationship (q-RASAR)
3.4 Conclusion
References
4 Tools, Applications, and Case Studies (q-RA and q-RASAR)
4.1 Introduction
4.2 Cheminformatic Tools from the DTC Laboratory to Perform Read-Across and RASAR Modeling
4.2.1 Read-Across-v4.2.1
4.2.2 Auto_RA_Optimizer-v1.0
4.2.3 RASAR-Desc-Calc-v3.0.2
4.3 Applications and Case Studies of q-RA and q-RASAR
4.3.1 Applications of q-RA
4.3.2 Applications of q-RASAR
4.4 Conclusion
References
5 Future Prospects
References
Alternative description
The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Alternative description
SpringerBriefs in Molecular Science
Erscheinungsdatum: 26.01.2024
Erscheinungsdatum: 26.01.2024
date open sourced
2024-02-25
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